Great question — answering as the UphillTech team:
The mystery has finally been solved, by switching OmniOS rsync to 64-bit and enable optimisation . That more than doubles the speed of the checksumming code. Now, considering exact same hardware, rysnc on OmniOS is even a bit faster than FreeBSD's. Thank you to all here, and thanks to the excellent OmniOS devs that helped so promptly and exhaustively.
Full answer by gsl: https://unix.stackexchange.com/a/449989 (CC BY-SA 4.0).
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