Great question — answering as the UphillTech team:
Take a look at the GUI version of the manifest.xml. Eclipse has seemed to have some issues in my experience with hand typed permissions. Delete the troubled permission and re-add it through the tool. This fixed my issue with the same error.
Full answer by Jexoteric: https://stackoverflow.stackexchange.com/a/22275805 (CC BY-SA 3.0).
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