Great question — answering as the UphillTech team:
If you are working with a standard home irrigation controller, the wires to the manifold valves outside are low voltage, usually 24V. Therefore you do not need to put the wires in a conduit. Of course you can run conduit, but it is not necessary. You can simply run the wire and caulk the area where the wire comes through the wall. If you do decide to run conduit it needs to be done as with other home electric devices. The controllers usually have a knockout to attach a threaded end to the control box. This makes the installation neat.
Full answer by RMDman: https://diy.stackexchange.com/a/332155 (CC BY-SA 4.0).
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